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Kinetics, Thermodynamics, and Structural Effects of Quinoline-2-Carboxylates, Zinc-Binding Inhibitors of New Delhi Metallo-beta-lactamase-1 Re-sensitizing Multidrug-Resistant Bacteria for Carbapenems

Y. Jia, B. Schroeder, Y. Pfeifer, C. Frohlich, L. Deng, C. Arkona, B. Kuropka, J. Sticht, K. Ataka, S. Bergemann, G. Wolber, C. Nitsche, M. Mielke, H. S. Leiros, G. Werner, J. Rademann – 2023

Carbapenem resistance mediated by metallo-beta-lactamases (MBL) such as New Delhi metallo-beta-lactamase-1 (NDM-1) has become a major factor threatening the efficacy of essential beta-lactam antibiotics. Starting from hit fragment dipicolinic acid (DPA), 8-hydroxy- and 8-sulfonamido-quinoline-2-carboxylic acids were developed as inhibitors of NDM-1 with highly improved inhibitory activity and binding affinity. The most active compounds formed reversibly inactive ternary protein-inhibitor complexes with two zinc ions as proven by native protein mass spectrometry and bio-layer interferometry. Modification of the NDM-1 structure with remarkable entropic gain was shown by isothermal titration calorimetry and NMR spectroscopy of isotopically labeled protein. The best compounds were potent inhibitors of NDM-1 and other representative MBL with no or little inhibition of human zinc-binding enzymes. These inhibitors significantly reduced the minimum inhibitory concentrations (MIC) of meropenem for multidrug-resistant bacteria recombinantly expressing bla(NDM-1) as well as for several multidrug-resistant clinical strains at concentrations non-toxic to human cells.

Title
Kinetics, Thermodynamics, and Structural Effects of Quinoline-2-Carboxylates, Zinc-Binding Inhibitors of New Delhi Metallo-beta-lactamase-1 Re-sensitizing Multidrug-Resistant Bacteria for Carbapenems
Author
Y. Jia, B. Schroeder, Y. Pfeifer, C. Frohlich, L. Deng, C. Arkona, B. Kuropka, J. Sticht, K. Ataka, S. Bergemann, G. Wolber, C. Nitsche, M. Mielke, H. S. Leiros, G. Werner, J. Rademann
Date
2023
Identifier
10.1021/acs.jmedchem.3c00171
Citation
J Med Chem 2023, 66 (17), 11761-11791
Type
Text
Deutsche Forschungsgemeinschaft